Nieto-Castanon, A. & Whitfield-Gabrieli, S. (2019). CONN functional connectivity toolbox: RRID SCR_009550, release 19. Hilbert Press. doi:10.56441/hilbertpress.1927.9364


ZIP (software)

Share (

Share (NeuroImaging Tools and Resources Collaboratory, NITRC)

CONN functional connectivity toolbox: RRID SCR_009550, release 19

Nieto-Castanon, A. & Whitfield-Gabrieli, S. (2019)

go to latest release/edition


CONN 19 is a Matlab-based cross-platform software for the computation, display, and analysis of functional connectivity in fMRI (fcMRI). Connectivity measures include seed-to-voxel connectivity maps, ROI-to- ROI connectivity matrices, graph properties of connectivity networks, generalized psychophysiological interaction models (gPPI), intrinsic connectivity, local correlation and other voxel-to-voxel measures, independent component analyses (ICA), and dynamic component analyses (dyn-ICA). CONN is available for resting state data (rsfMRI) as well as task-related designs. It covers the entire pipeline from raw fMRI data to hypothesis testing, including spatial coregistration, ART-based scrubbing, aCompCor strategy for control of physiological and movement confounds, first-level connectivity estimation, and second-level random-effect analyses and hypothesis testing.

CONN 19 ZIP md5: 17c30efe700d10941e51a2f850ad6fcb